SEP IRA Contribution

I have a SEP IRA for my LLC (non-operating entity I use for real estate). I also have a normal W-2 job with a 401k (making more than ira deductibility limit).
I made a contribution of $5,200 to my SEP IRA. I made the contribution on April 10th, 2023, but indicated it was deductible for the previous year 2022.

I intended for the contribution to come from the “employer” of the SEP IRA, but reviewing the 5498 I received, it indicates in Box 1: IRA contributions 5,200. In box 7, it has SEP IRA checked. And then in Box 8: SEP Contributions: $0.

I’m confused as to what went wrong here. Was the contribution coded as a deductible SEP IRA contribution from myself and not the employer?

I already filed my taxes indicating the employer contributed a tax deductible 5,200 to the SEP. And I never filed any deductible IRA contributions for myself. Will the IRS see an issue with this?



  1. Not clear what caused this problem, but the 5498 should not show the contribution in Box 1 if it is a SEP contribution. Yes, the IRS will see this as a conflict with your 2022 return. A SEP contribution made in 2023 would be reported on a 2023 5498 regardless of the year you intend to report it on your 1040. The 5498 issued  indicates that you made a 2022 IRA contribution to a SEP IRA, which is legal, but it would be non deductible and it not what you intended. Try to get the custodian to issue a corrected 5498 showing no contributions and to code the contribution as a SEP contribution to be reported on a 2023 5498. Unfortuneately, you cannot have the contribution “recharacterized” as a SEP contribution. If they will not agree to the correction, you will have to request that the contribution be returned to you adjusted for gain/loss.
  2. Before considering the above, note that passive real estate activities such as receiving rents is not eligible for a SEP contribution in the first place. Generally, you must pay SE tax on income eligible for a SEP contribution. 

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